STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKD01909.1Conjugal transfer protein TraK; Derived by automated computational analysis using gene prediction method: Protein Homology. (202 aa)    
Predicted Functional Partners:
AKD01910.1
Plasmid transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.952
AKD01913.1
Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.948
AKD01915.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.926
AKD01908.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.914
AKD01907.1
Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.912
AKD01906.1
Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.866
AKD04279.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.813
AKD01911.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.732
AKD01912.1
Plasmid transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.731
AKD01914.1
Plasmid transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.658
Your Current Organism:
Pontibacter korlensis
NCBI taxonomy Id: 400092
Other names: CCTCC AB 206081, NRRL B-51097, P. korlensis, Pontibacter korlensis Zhang et al. 2008, Pontibacter sp. z1, Pontibacter sp. z2, strain X14-1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.