STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKD03355.1N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)    
Predicted Functional Partners:
AKD02046.1
Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.928
AKD04662.1
Cell wall biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
AKD03501.1
Cell envelope biogenesis protein LolA; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.775
AKD02424.1
Peptidase m23; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.670
AKD03354.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.658
AKD02428.1
Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.604
AKD05457.1
Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.534
AKD03343.1
Transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.513
AKD03271.1
Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.509
AKD05873.1
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.481
Your Current Organism:
Pontibacter korlensis
NCBI taxonomy Id: 400092
Other names: CCTCC AB 206081, NRRL B-51097, P. korlensis, Pontibacter korlensis Zhang et al. 2008, Pontibacter sp. z1, Pontibacter sp. z2, strain X14-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.