STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKD04175.1Acyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)    
Predicted Functional Partners:
AKD03515.1
acyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.830
queE
7-carboxy-7-deazaguanine synthase; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.
  
     0.671
AKD04176.1
phenylalanyl-tRNA synthetase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MtfA family.
     
 0.654
AKD04174.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.652
AKD05412.1
Aminotransferase class III; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
    0.619
AKD02808.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.598
AKD03611.1
Decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.554
AKD04576.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.531
AKD04901.1
Motility; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.520
AKD02442.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.494
Your Current Organism:
Pontibacter korlensis
NCBI taxonomy Id: 400092
Other names: CCTCC AB 206081, NRRL B-51097, P. korlensis, Pontibacter korlensis Zhang et al. 2008, Pontibacter sp. z1, Pontibacter sp. z2, strain X14-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.