STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKD05871.1Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (466 aa)    
Predicted Functional Partners:
AKD04425.1
Trehalose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.898
AKD04530.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.898
AKD04556.1
Alpha-amlyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.
   
 0.898
AKD05305.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.898
glgE
Alpha-amlyase; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
   
 0.898
AKD05048.1
RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.876
AKD01881.1
DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.433
pcm-2
protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
       0.426
AKD04971.1
Pyridoxal-dependent decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.421
AKD03895.1
Potassium channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.412
Your Current Organism:
Pontibacter korlensis
NCBI taxonomy Id: 400092
Other names: CCTCC AB 206081, NRRL B-51097, P. korlensis, Pontibacter korlensis Zhang et al. 2008, Pontibacter sp. z1, Pontibacter sp. z2, strain X14-1
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