STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKD05880.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)    
Predicted Functional Partners:
AKD05106.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.556
pxpA
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
       0.556
AKD05108.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.556
AKD05109.1
Kinase inhibitor; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.556
AKD05110.1
Inositol monophosphatase; Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA/RNA precursor pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions.
       0.556
AKD05105.1
Dihydroorotate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.552
AKD02395.1
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
 
      0.546
Your Current Organism:
Pontibacter korlensis
NCBI taxonomy Id: 400092
Other names: CCTCC AB 206081, NRRL B-51097, P. korlensis, Pontibacter korlensis Zhang et al. 2008, Pontibacter sp. z1, Pontibacter sp. z2, strain X14-1
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