A1S_0453 protein (Acinetobacter baumannii ATCC 17978)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A1S_0453

Putative biopolymer transport protein (ExbB). (206 aa)

Predicted Functional Partners:

A1S_0454

0.992

A1S_0452

0.963

A1S_1603

0.922

A1S_1604

0.914

A1S_2592

0.911

A1S_3708

0.794

A1S_1554

0.747

A1S_2594

0.740

A1S_2595

0.740

A1S_3032

0.702

Your Current Organism:

Acinetobacter baumannii ATCC 17978

NCBI taxonomy Id: 400667
Other names: A. baumannii ATCC 17978, Acinetobacter baumannii str. ATCC 17978, Acinetobacter baumannii strain ATCC 17978

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A1S_0452	A1S_0453	Hypothetical protein.	Putative biopolymer transport protein (ExbB).	0.963
A1S_0452	A1S_0454	Hypothetical protein.	Putative biopolymer transport protein (ExbD).	0.965
A1S_0452	A1S_1554	Hypothetical protein.	Putative biopolymer transport protein ExbD/TolR.	0.808
A1S_0452	A1S_1603	Hypothetical protein.	Biopolymer transport protein ExbD/TolR.	0.882
A1S_0452	A1S_1604	Hypothetical protein.	Biopolymer transport protein ExbD/TolR.	0.787
A1S_0452	A1S_2592	Hypothetical protein.	Tolerance to group A colicins single-stranded DNA filamentous phage; Required for OM integrity.	0.787
A1S_0452	A1S_2594	Hypothetical protein.	Tolerance to colicins E2 E, A, and K; Required for OM integrity.	0.729
A1S_0453	A1S_0452	Putative biopolymer transport protein (ExbB).	Hypothetical protein.	0.963
A1S_0453	A1S_0454	Putative biopolymer transport protein (ExbB).	Putative biopolymer transport protein (ExbD).	0.992
A1S_0453	A1S_1554	Putative biopolymer transport protein (ExbB).	Putative biopolymer transport protein ExbD/TolR.	0.747
A1S_0453	A1S_1603	Putative biopolymer transport protein (ExbB).	Biopolymer transport protein ExbD/TolR.	0.922
A1S_0453	A1S_1604	Putative biopolymer transport protein (ExbB).	Biopolymer transport protein ExbD/TolR.	0.914
A1S_0453	A1S_2592	Putative biopolymer transport protein (ExbB).	Tolerance to group A colicins single-stranded DNA filamentous phage; Required for OM integrity.	0.911
A1S_0453	A1S_2594	Putative biopolymer transport protein (ExbB).	Tolerance to colicins E2 E, A, and K; Required for OM integrity.	0.740
A1S_0453	A1S_2595	Putative biopolymer transport protein (ExbB).	Peptidoglycan-associated lipoprotein precursor.	0.740
A1S_0453	A1S_3032	Putative biopolymer transport protein (ExbB).	TonB-like protein.	0.702
A1S_0453	A1S_3708	Putative biopolymer transport protein (ExbB).	Hypothetical protein.	0.794
A1S_0454	A1S_0452	Putative biopolymer transport protein (ExbD).	Hypothetical protein.	0.965
A1S_0454	A1S_0453	Putative biopolymer transport protein (ExbD).	Putative biopolymer transport protein (ExbB).	0.992
A1S_0454	A1S_2594	Putative biopolymer transport protein (ExbD).	Tolerance to colicins E2 E, A, and K; Required for OM integrity.	0.407