Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
A1S_1112 | A1S_1887 | Putative hydroxycinnamate transporter. | 4-hydroxybenzoate transporter (MFS superfamily). | 0.712 |
A1S_1117 | A1S_1887 | Vanillate transporter (MFS superfamily). | 4-hydroxybenzoate transporter (MFS superfamily). | 0.671 |
A1S_1740 | A1S_1887 | Benzoate transport. | 4-hydroxybenzoate transporter (MFS superfamily). | 0.672 |
A1S_1881 | A1S_1884 | Porin. | Protocatechuate 34-dioxygenase alpha chain (3,4-PCD). | 0.437 |
A1S_1881 | A1S_1885 | Porin. | Protocatechuate 34-dioxygenase beta chain (3,4-PCD). | 0.425 |
A1S_1881 | A1S_1886 | Porin. | Gamma-carboxymuconolactone decarboxylase (CMD). | 0.456 |
A1S_1881 | A1S_1887 | Porin. | 4-hydroxybenzoate transporter (MFS superfamily). | 0.593 |
A1S_1884 | A1S_1881 | Protocatechuate 34-dioxygenase alpha chain (3,4-PCD). | Porin. | 0.437 |
A1S_1884 | A1S_1885 | Protocatechuate 34-dioxygenase alpha chain (3,4-PCD). | Protocatechuate 34-dioxygenase beta chain (3,4-PCD). | 0.999 |
A1S_1884 | A1S_1886 | Protocatechuate 34-dioxygenase alpha chain (3,4-PCD). | Gamma-carboxymuconolactone decarboxylase (CMD). | 0.979 |
A1S_1884 | A1S_1887 | Protocatechuate 34-dioxygenase alpha chain (3,4-PCD). | 4-hydroxybenzoate transporter (MFS superfamily). | 0.774 |
A1S_1884 | A1S_1888 | Protocatechuate 34-dioxygenase alpha chain (3,4-PCD). | Putative transport protein. | 0.731 |
A1S_1884 | A1S_1889 | Protocatechuate 34-dioxygenase alpha chain (3,4-PCD). | 3-oxoadipate enol-lactonase I; Enol-lactone hydrolase I; Beta-ketoadipate enol-lactone hydrolase I. | 0.789 |
A1S_1884 | A1S_1890 | Protocatechuate 34-dioxygenase alpha chain (3,4-PCD). | 3-carboxy-ciscis-muconate cycloisomerase; 3-carboxymuconate lactonizing enzyme; CMLE. | 0.994 |
A1S_1885 | A1S_1881 | Protocatechuate 34-dioxygenase beta chain (3,4-PCD). | Porin. | 0.425 |
A1S_1885 | A1S_1884 | Protocatechuate 34-dioxygenase beta chain (3,4-PCD). | Protocatechuate 34-dioxygenase alpha chain (3,4-PCD). | 0.999 |
A1S_1885 | A1S_1886 | Protocatechuate 34-dioxygenase beta chain (3,4-PCD). | Gamma-carboxymuconolactone decarboxylase (CMD). | 0.981 |
A1S_1885 | A1S_1887 | Protocatechuate 34-dioxygenase beta chain (3,4-PCD). | 4-hydroxybenzoate transporter (MFS superfamily). | 0.776 |
A1S_1885 | A1S_1888 | Protocatechuate 34-dioxygenase beta chain (3,4-PCD). | Putative transport protein. | 0.684 |
A1S_1885 | A1S_1889 | Protocatechuate 34-dioxygenase beta chain (3,4-PCD). | 3-oxoadipate enol-lactonase I; Enol-lactone hydrolase I; Beta-ketoadipate enol-lactone hydrolase I. | 0.843 |
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