STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylB-2TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: pin:Ping_0224 xylulokinase. (482 aa)    
Predicted Functional Partners:
xylA
TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ppr:PBPRA0457 putative D-xylose isomerase; Belongs to the xylose isomerase family.
 
 
 0.979
ABR70021.1
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: hch:HCH_01298 mannitol-1-phosphate/altronate dehydrogenase.
 
  
 0.928
ABR69988.1
PFAM: ribulose-phosphate 3-epimerase; KEGG: pen:PSEEN0442 D-ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.923
ABR70793.1
PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: eca:ECA0101 xylose operon regulatory protein.
 
 
 
 0.754
ABR70791.1
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: yps:YPTB3888 ABC xylose transporter, fused permease domains; Belongs to the binding-protein-dependent transport system permease family.
 
     0.713
ABR70789.1
TIGRFAM: D-xylose ABC transporter, periplasmic substrate-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: yps:YPTB3890 ABC transporter, periplasmic xylose binding protein.
 
   
 0.680
xylG
D-xylose ABC transporter, ATPase subunit; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.
     
 0.656
ABR69818.1
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: atc:AGR_L_2948 hypothetical protein.
  
 
 0.534
ABR72810.1
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: csa:Csal_0292 4-hydroxyphenylpyruvate dioxygenase.
  
 
 0.534
ABR70794.1
PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ppr:PBPRB1561 putative ribose operon repressor, rbsR.
 
 
 
 0.454
Your Current Organism:
Marinomonas sp. MWYL1
NCBI taxonomy Id: 400668
Other names: M. sp. MWYL1
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