STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABR72417.1PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ppr:PBPRB1744 putative glycine betaine-binding ABC transporter. (311 aa)    
Predicted Functional Partners:
ABR72418.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vpa:VPA1110 putative permease of ABC transporter.
 
 0.999
ABR72419.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRB1742 putative ATP-binding component of ABC transporter.
 
 0.999
betI
Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes.
 
     0.848
ABR71670.1
PFAM: Sarcosine oxidase gamma subunit; KEGG: cps:CPS_4035 sarcosine oxidase, gamma subunit.
 
  
 0.523
ABR71672.1
TIGRFAM: sarcosine oxidase, delta subunit family; PFAM: Sarcosine oxidase delta subunit heterotetrameric; KEGG: pen:PSEEN5160 sarcosine oxidase, delta subunit.
 
    0.516
betA
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
   
 0.514
ABR71634.1
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: ppu:PP_0313 electron transfer flavoprotein, beta subunit, putative.
 
  
 0.506
ABR69056.1
PFAM: extracellular solute-binding protein family 5; KEGG: rru:Rru_A2356 extracellular solute-binding protein, family 5.
  
  
 0.486
ABR71671.1
TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Glycine cleavage T-protein barrel; KEGG: pfl:PFL_5726 sarcosine oxidase, alpha subunit; Belongs to the GcvT family.
 
  
 0.475
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
    0.474
Your Current Organism:
Marinomonas sp. MWYL1
NCBI taxonomy Id: 400668
Other names: M. sp. MWYL1
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