A0A1X7SIN3 protein (Amphimedon queenslandica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1X7SIN3

Uncharacterized protein. (227 aa)

Predicted Functional Partners:

A0A1X7SV59

0.993

A0A1X7VEE0

0.993

A0A1X7UMC8

0.972

A0A1X7UX89

0.972

A0A1X7U3Y5

0.966

A0A1X7V6E2

0.966

A0A1X7VSI6

0.966

A0A1X7VV04

0.966

A0A1X7TUG1

0.965

A0A1X7TTD3

0.964

Your Current Organism:

Amphimedon queenslandica

NCBI taxonomy Id: 400682
Other names: A. queenslandica, Amphimedon queenslandica Hooper & Van Soest, 2006, Reniera sp. JGI-2005

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1X7SIN3	A0A1X7SV59	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.993
A0A1X7SIN3	A0A1X7TTD3	Uncharacterized protein.	TRASH domain-containing protein.	0.964
A0A1X7SIN3	A0A1X7TUG1	Uncharacterized protein.	Ribosomal_L7Ae domain-containing protein.	0.965
A0A1X7SIN3	A0A1X7U3Y5	Uncharacterized protein.	Uncharacterized protein.	0.966
A0A1X7SIN3	A0A1X7UMC8	Uncharacterized protein.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.972
A0A1X7SIN3	A0A1X7UX89	Uncharacterized protein.	Uncharacterized protein.	0.972
A0A1X7SIN3	A0A1X7V6E2	Uncharacterized protein.	Ribosomal_L2_C domain-containing protein.	0.966
A0A1X7SIN3	A0A1X7VEE0	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.993
A0A1X7SIN3	A0A1X7VSI6	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	0.966
A0A1X7SIN3	A0A1X7VV04	Uncharacterized protein.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.966
A0A1X7SV59	A0A1X7SIN3	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.993
A0A1X7SV59	A0A1X7TTD3	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	TRASH domain-containing protein.	0.999
A0A1X7SV59	A0A1X7TUG1	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal_L7Ae domain-containing protein.	0.999
A0A1X7SV59	A0A1X7U3Y5	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.999
A0A1X7SV59	A0A1X7UMC8	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.999
A0A1X7SV59	A0A1X7UX89	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.999
A0A1X7SV59	A0A1X7V6E2	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal_L2_C domain-containing protein.	0.999
A0A1X7SV59	A0A1X7VEE0	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.945
A0A1X7SV59	A0A1X7VSI6	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	0.999
A0A1X7SV59	A0A1X7VV04	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999