STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1X7SLF1MIF4G domain-containing protein. (99 aa)    
Predicted Functional Partners:
A0A1X7VCV6
RNA helicase.
   
 
 0.867
A0A1X7UHR3
KH domain-containing protein.
   
 
 0.856
A0A1X7UKG2
Sas10 domain-containing protein.
   
 
 0.840
A0A1X7VVT0
Uncharacterized protein.
   
   0.835
A0A1X7UL77
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.834
A0A1X7USF5
NUC153 domain-containing protein.
   
   0.832
A0A1X7VD15
CBF domain-containing protein.
   
   0.831
A0A1X7VVF8
Uncharacterized protein.
   
   0.826
A0A1X7UXY3
Uncharacterized protein.
   
 
 0.819
A0A1X7UMC0
WD_REPEATS_REGION domain-containing protein.
   
   0.783
Your Current Organism:
Amphimedon queenslandica
NCBI taxonomy Id: 400682
Other names: A. queenslandica, Amphimedon queenslandica Hooper & Van Soest, 2006, Reniera sp. JGI-2005
Server load: low (28%) [HD]