A0A1X7TDL6 protein (Amphimedon queenslandica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1X7TDL6

Protein kinase domain-containing protein. (98 aa)

Predicted Functional Partners:

A0A1X7UKT9

0.810

A0A1X7VRN8

0.810

A0A1X7VIQ0

0.651

A0A1X7VXQ0

0.605

A0A1X7UAQ0

0.574

A0A1X7UVT2

0.574

A0A1X7UYY0

0.574

A0A1X7VSW4

0.574

A0A1X7T7I0

0.553

A0A1X7UBN8

0.553

Your Current Organism:

Amphimedon queenslandica

NCBI taxonomy Id: 400682
Other names: A. queenslandica, Amphimedon queenslandica Hooper & Van Soest, 2006, Reniera sp. JGI-2005

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1X7T7I0	A0A1X7TDL6	Cyclic nucleotide-binding domain-containing protein.	Protein kinase domain-containing protein.	0.553
A0A1X7T7I0	A0A1X7VIQ0	Cyclic nucleotide-binding domain-containing protein.	Tudor domain-containing protein.	0.593
A0A1X7TDL6	A0A1X7T7I0	Protein kinase domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.553
A0A1X7TDL6	A0A1X7UAQ0	Protein kinase domain-containing protein.	Phosphodiesterase.	0.574
A0A1X7TDL6	A0A1X7UBN8	Protein kinase domain-containing protein.	Uncharacterized protein.	0.553
A0A1X7TDL6	A0A1X7UKT9	Protein kinase domain-containing protein.	Uncharacterized protein.	0.810
A0A1X7TDL6	A0A1X7UVT2	Protein kinase domain-containing protein.	PDEase domain-containing protein; Belongs to the cyclic nucleotide phosphodiesterase family.	0.574
A0A1X7TDL6	A0A1X7UYY0	Protein kinase domain-containing protein.	Phosphodiesterase.	0.574
A0A1X7TDL6	A0A1X7VIQ0	Protein kinase domain-containing protein.	Tudor domain-containing protein.	0.651
A0A1X7TDL6	A0A1X7VRN8	Protein kinase domain-containing protein.	Uncharacterized protein.	0.810
A0A1X7TDL6	A0A1X7VSW4	Protein kinase domain-containing protein.	Uncharacterized protein.	0.574
A0A1X7TDL6	A0A1X7VXQ0	Protein kinase domain-containing protein.	Uncharacterized protein.	0.605
A0A1X7UAQ0	A0A1X7TDL6	Phosphodiesterase.	Protein kinase domain-containing protein.	0.574
A0A1X7UBN8	A0A1X7TDL6	Uncharacterized protein.	Protein kinase domain-containing protein.	0.553
A0A1X7UBN8	A0A1X7VIQ0	Uncharacterized protein.	Tudor domain-containing protein.	0.593
A0A1X7UKT9	A0A1X7TDL6	Uncharacterized protein.	Protein kinase domain-containing protein.	0.810
A0A1X7UKT9	A0A1X7VIQ0	Uncharacterized protein.	Tudor domain-containing protein.	0.788
A0A1X7UVT2	A0A1X7TDL6	PDEase domain-containing protein; Belongs to the cyclic nucleotide phosphodiesterase family.	Protein kinase domain-containing protein.	0.574
A0A1X7UYY0	A0A1X7TDL6	Phosphodiesterase.	Protein kinase domain-containing protein.	0.574
A0A1X7VIQ0	A0A1X7T7I0	Tudor domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.593