A0A1X7TLK8 protein (Amphimedon queenslandica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1X7TLK8

ATG7_N domain-containing protein. (119 aa)

Predicted Functional Partners:

A0A1X7U483

0.847

A0A1X7V7J1

0.804

A0A1X7UV34

0.710

A0A1X7V685

0.698

A0A1X7UV30

0.675

A0A1X7VEM4

0.675

A0A1X7VH09

0.675

A0A1X7VA20

0.656

A0A1X7VLP9

0.656

A0A1X7V4U2

0.640

Your Current Organism:

Amphimedon queenslandica

NCBI taxonomy Id: 400682
Other names: A. queenslandica, Amphimedon queenslandica Hooper & Van Soest, 2006, Reniera sp. JGI-2005

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1X7TLK8	A0A1X7U483	ATG7_N domain-containing protein.	Autophagy-related protein 3.	0.847
A0A1X7TLK8	A0A1X7UV30	ATG7_N domain-containing protein.	Uncharacterized protein.	0.675
A0A1X7TLK8	A0A1X7UV34	ATG7_N domain-containing protein.	Molybdopterin synthase catalytic subunit; Catalytic subunit of the molybdopterin synthase complex, a complex that catalyzes the conversion of precursor Z into molybdopterin. Acts by mediating the incorporation of 2 sulfur atoms from thiocarboxylated MOCS2A into precursor Z to generate a dithiolene group.	0.710
A0A1X7TLK8	A0A1X7V4U2	ATG7_N domain-containing protein.	Autophagy_act_C domain-containing protein.	0.640
A0A1X7TLK8	A0A1X7V685	ATG7_N domain-containing protein.	Uncharacterized protein.	0.698
A0A1X7TLK8	A0A1X7V7J1	ATG7_N domain-containing protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.804
A0A1X7TLK8	A0A1X7VA20	ATG7_N domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.656
A0A1X7TLK8	A0A1X7VEM4	ATG7_N domain-containing protein.	Uncharacterized protein.	0.675
A0A1X7TLK8	A0A1X7VH09	ATG7_N domain-containing protein.	Uncharacterized protein.	0.675
A0A1X7TLK8	A0A1X7VLP9	ATG7_N domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.656
A0A1X7U483	A0A1X7TLK8	Autophagy-related protein 3.	ATG7_N domain-containing protein.	0.847
A0A1X7U483	A0A1X7UV30	Autophagy-related protein 3.	Uncharacterized protein.	0.994
A0A1X7U483	A0A1X7V4U2	Autophagy-related protein 3.	Autophagy_act_C domain-containing protein.	0.668
A0A1X7U483	A0A1X7V685	Autophagy-related protein 3.	Uncharacterized protein.	0.959
A0A1X7U483	A0A1X7V7J1	Autophagy-related protein 3.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.999
A0A1X7U483	A0A1X7VEM4	Autophagy-related protein 3.	Uncharacterized protein.	0.995
A0A1X7U483	A0A1X7VH09	Autophagy-related protein 3.	Uncharacterized protein.	0.994
A0A1X7UV30	A0A1X7TLK8	Uncharacterized protein.	ATG7_N domain-containing protein.	0.675
A0A1X7UV30	A0A1X7U483	Uncharacterized protein.	Autophagy-related protein 3.	0.994
A0A1X7UV30	A0A1X7V4U2	Uncharacterized protein.	Autophagy_act_C domain-containing protein.	0.493