STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1X7U1X7VPS9 domain-containing protein. (436 aa)    
Predicted Functional Partners:
A0A1X7UN29
Uncharacterized protein.
    
 0.667
A0A1X7TC33
Uncharacterized protein.
    
 0.501
A0A1X7TNP2
Uncharacterized protein.
    
 0.501
A0A1X7TP29
Uncharacterized protein.
    
 0.501
A0A1X7UJA5
Uncharacterized protein.
    
 0.501
A0A1X7TXX6
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.490
A0A1X7UVU6
Uncharacterized protein.
   
 0.488
A0A1X7SPU0
VPS9 domain-containing protein.
    
 0.449
A0A1X7UHK8
VPS9 domain-containing protein.
    
 0.449
A0A1X7UP77
M20_dimer domain-containing protein.
      
 0.449
Your Current Organism:
Amphimedon queenslandica
NCBI taxonomy Id: 400682
Other names: A. queenslandica, Amphimedon queenslandica Hooper & Van Soest, 2006, Reniera sp. JGI-2005
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