STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1X7U5I7Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family. (282 aa)    
Predicted Functional Partners:
A0A1X7U306
Brix domain-containing protein.
   
 
 0.729
A0A1X7UF59
WD_REPEATS_REGION domain-containing protein.
   
  
 0.649
A0A1X7V372
Brix domain-containing protein.
   
    0.645
A0A1X7VTT3
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
 
 0.617
A0A1X7VSI6
Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.
    
 
 0.603
A0A1X7SUP5
Uncharacterized protein.
    
 
 0.580
A0A1X7UF10
Ribosomal_L18_c domain-containing protein.
    
 
 0.580
A0A1X7V855
WD_REPEATS_REGION domain-containing protein.
   
  
 0.551
A0A1X7VWL4
Uncharacterized protein.
   
  
 0.548
A0A1X7VF70
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
  
 0.546
Your Current Organism:
Amphimedon queenslandica
NCBI taxonomy Id: 400682
Other names: A. queenslandica, Amphimedon queenslandica Hooper & Van Soest, 2006, Reniera sp. JGI-2005
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