A0A1X7UEW6 protein (Amphimedon queenslandica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1X7UEW6

RECA_2 domain-containing protein. (356 aa)

Predicted Functional Partners:

A0A1X7V1F2

0.996

A0A1X7T0V7

0.987

A0A1X7VMB0

0.987

A0A1X7UMJ1

0.985

A0A1X7UWV6

0.983

A0A1X7UR21

0.969

A0A1X7ULY8

0.965

A0A1X7V7I5

0.912

A0A1X7V4T2

0.869

A0A1X7V165

0.867

Your Current Organism:

Amphimedon queenslandica

NCBI taxonomy Id: 400682
Other names: A. queenslandica, Amphimedon queenslandica Hooper & Van Soest, 2006, Reniera sp. JGI-2005

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1X7T0V7	A0A1X7UEW6	Uncharacterized protein.	RECA_2 domain-containing protein.	0.987
A0A1X7T0V7	A0A1X7ULY8	Uncharacterized protein.	RECA_2 domain-containing protein.	0.920
A0A1X7T0V7	A0A1X7UMJ1	Uncharacterized protein.	RECA_2 domain-containing protein.	0.918
A0A1X7T0V7	A0A1X7UR21	Uncharacterized protein.	Uncharacterized protein.	0.761
A0A1X7T0V7	A0A1X7UWV6	Uncharacterized protein.	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily.	0.997
A0A1X7T0V7	A0A1X7V165	Uncharacterized protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.746
A0A1X7T0V7	A0A1X7V1F2	Uncharacterized protein.	RECA_2 domain-containing protein.	0.880
A0A1X7T0V7	A0A1X7V4T2	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.777
A0A1X7T0V7	A0A1X7V7I5	Uncharacterized protein.	Uncharacterized protein.	0.732
A0A1X7T0V7	A0A1X7VMB0	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1X7UEW6	A0A1X7T0V7	RECA_2 domain-containing protein.	Uncharacterized protein.	0.987
A0A1X7UEW6	A0A1X7ULY8	RECA_2 domain-containing protein.	RECA_2 domain-containing protein.	0.965
A0A1X7UEW6	A0A1X7UMJ1	RECA_2 domain-containing protein.	RECA_2 domain-containing protein.	0.985
A0A1X7UEW6	A0A1X7UR21	RECA_2 domain-containing protein.	Uncharacterized protein.	0.969
A0A1X7UEW6	A0A1X7UWV6	RECA_2 domain-containing protein.	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily.	0.983
A0A1X7UEW6	A0A1X7V165	RECA_2 domain-containing protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.867
A0A1X7UEW6	A0A1X7V1F2	RECA_2 domain-containing protein.	RECA_2 domain-containing protein.	0.996
A0A1X7UEW6	A0A1X7V4T2	RECA_2 domain-containing protein.	TPR_REGION domain-containing protein.	0.869
A0A1X7UEW6	A0A1X7V7I5	RECA_2 domain-containing protein.	Uncharacterized protein.	0.912
A0A1X7UEW6	A0A1X7VMB0	RECA_2 domain-containing protein.	Uncharacterized protein.	0.987