STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1X7URE4Uncharacterized protein. (199 aa)    
Predicted Functional Partners:
A0A1X7UHX4
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.887
A0A1X7VEI4
RPOLD domain-containing protein.
  
 0.878
A0A1X7TT98
Uncharacterized protein.
   
 0.830
A0A1X7VMQ2
RNA_pol_L_2 domain-containing protein.
   
 0.815
A0A1X7UHG4
Uncharacterized protein.
  
 0.808
A0A1X7VAQ9
TFIIS-type domain-containing protein.
   
 0.805
A0A1X7SDW0
RNA_pol_Rpb2_7 domain-containing protein.
  
 0.798
A0A1X7VNB9
DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.
   
 0.792
A0A1X7TLS9
Uncharacterized protein.
   
 0.776
A0A1X7UAE5
Uncharacterized protein.
   
 0.776
Your Current Organism:
Amphimedon queenslandica
NCBI taxonomy Id: 400682
Other names: A. queenslandica, Amphimedon queenslandica Hooper & Van Soest, 2006, Reniera sp. JGI-2005
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