STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1X7UW89Uncharacterized protein. (1527 aa)    
Predicted Functional Partners:
A0A1X7VUG2
Uncharacterized protein.
    
   0.984
A0A1X7V6T3
Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.
    
 
 0.879
A0A1X7V3M8
RING-type domain-containing protein.
    
 
 0.731
A0A1X7V114
Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.
   
  
 0.693
A0A1X7U8X5
Uncharacterized protein.
   
  
 0.675
A0A1X7V5F2
Uncharacterized protein.
   
  
 0.675
A0A1X7TLH1
WD_REPEATS_REGION domain-containing protein.
      
 0.662
A0A1X7V3E9
Uncharacterized protein.
      
 0.662
A0A1X7V7J1
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
      
 0.662
A0A1X7V8X6
Uncharacterized protein.
   
  
 0.662
Your Current Organism:
Amphimedon queenslandica
NCBI taxonomy Id: 400682
Other names: A. queenslandica, Amphimedon queenslandica Hooper & Van Soest, 2006, Reniera sp. JGI-2005
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