A0A1X7UW97 protein (Amphimedon queenslandica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1X7UW97

Homeobox domain-containing protein; Belongs to the acyl-CoA dehydrogenase family. (563 aa)

Predicted Functional Partners:

A0A1X7TWE8

0.990

A0A1X7UYG1

0.990

A0A1X7UZX5

0.977

A0A1X7VGW7

0.976

A0A1X7VH96

0.956

A0A1X7VKJ7

0.955

A0A1X7VQW8

0.955

A0A1X7UHE3

0.950

A0A1X7U8S2

0.946

A0A1X7VL62

0.945

Your Current Organism:

Amphimedon queenslandica

NCBI taxonomy Id: 400682
Other names: A. queenslandica, Amphimedon queenslandica Hooper & Van Soest, 2006, Reniera sp. JGI-2005

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1X7TWE8	A0A1X7U8S2	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	ETF domain-containing protein.	0.581
A0A1X7TWE8	A0A1X7UHE3	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.970
A0A1X7TWE8	A0A1X7UW97	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Homeobox domain-containing protein; Belongs to the acyl-CoA dehydrogenase family.	0.990
A0A1X7TWE8	A0A1X7UYG1	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	ETF domain-containing protein.	0.824
A0A1X7TWE8	A0A1X7UZX5	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.891
A0A1X7TWE8	A0A1X7VGW7	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.990
A0A1X7TWE8	A0A1X7VH96	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Carn_acyltransf domain-containing protein.	0.615
A0A1X7TWE8	A0A1X7VKJ7	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.919
A0A1X7TWE8	A0A1X7VL62	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.975
A0A1X7TWE8	A0A1X7VQW8	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.921
A0A1X7U8S2	A0A1X7TWE8	ETF domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.581
A0A1X7U8S2	A0A1X7UHE3	ETF domain-containing protein.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.742
A0A1X7U8S2	A0A1X7UW97	ETF domain-containing protein.	Homeobox domain-containing protein; Belongs to the acyl-CoA dehydrogenase family.	0.946
A0A1X7U8S2	A0A1X7UYG1	ETF domain-containing protein.	ETF domain-containing protein.	0.999
A0A1X7U8S2	A0A1X7UZX5	ETF domain-containing protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.825
A0A1X7U8S2	A0A1X7VGW7	ETF domain-containing protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.697
A0A1X7U8S2	A0A1X7VKJ7	ETF domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.526
A0A1X7U8S2	A0A1X7VL62	ETF domain-containing protein.	Uncharacterized protein.	0.747
A0A1X7U8S2	A0A1X7VQW8	ETF domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.526
A0A1X7UHE3	A0A1X7TWE8	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.970