STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1X7V1X1Uncharacterized protein. (724 aa)    
Predicted Functional Partners:
A0A1X7VF94
Uncharacterized protein.
   
 0.976
A0A1X7VHI6
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs; Belongs to the RtcB family.
   
 0.973
A0A1X7SZM8
Uncharacterized protein.
    
 0.940
A0A1X7UD45
Uncharacterized protein.
   
 
 0.836
A0A1X7UK10
Uncharacterized protein.
   
 
 0.836
A0A1X7UKN6
Uncharacterized protein.
   
 
 0.836
A0A1X7UB47
Archease domain-containing protein.
     
 0.738
A0A1X7VDT7
Uncharacterized protein.
   
 0.714
A0A1X7VMN9
Uncharacterized protein.
   
  
0.671
A0A1X7VNW1
AAA domain-containing protein; Belongs to the AAA ATPase family.
   
   0.650
Your Current Organism:
Amphimedon queenslandica
NCBI taxonomy Id: 400682
Other names: A. queenslandica, Amphimedon queenslandica Hooper & Van Soest, 2006, Reniera sp. JGI-2005
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