A0A1X7V2L5 protein (Amphimedon queenslandica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1X7V2L5

Uncharacterized protein. (189 aa)

Predicted Functional Partners:

A0A1X7U734

0.814

A0A1X7V079

0.485

A0A1X7UAI6

0.407

A0A1X7VPF8

0.403

Your Current Organism:

Amphimedon queenslandica

NCBI taxonomy Id: 400682
Other names: A. queenslandica, Amphimedon queenslandica Hooper & Van Soest, 2006, Reniera sp. JGI-2005

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1X7U734	A0A1X7UAI6	Uncharacterized protein.	Uncharacterized protein.	0.689
A0A1X7U734	A0A1X7V079	Uncharacterized protein.	Uncharacterized protein.	0.852
A0A1X7U734	A0A1X7V2L5	Uncharacterized protein.	Uncharacterized protein.	0.814
A0A1X7U734	A0A1X7VPF8	Uncharacterized protein.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.759
A0A1X7UAI6	A0A1X7U734	Uncharacterized protein.	Uncharacterized protein.	0.689
A0A1X7UAI6	A0A1X7V079	Uncharacterized protein.	Uncharacterized protein.	0.674
A0A1X7UAI6	A0A1X7V2L5	Uncharacterized protein.	Uncharacterized protein.	0.407
A0A1X7V079	A0A1X7U734	Uncharacterized protein.	Uncharacterized protein.	0.852
A0A1X7V079	A0A1X7UAI6	Uncharacterized protein.	Uncharacterized protein.	0.674
A0A1X7V079	A0A1X7V2L5	Uncharacterized protein.	Uncharacterized protein.	0.485
A0A1X7V079	A0A1X7VPF8	Uncharacterized protein.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.711
A0A1X7V2L5	A0A1X7U734	Uncharacterized protein.	Uncharacterized protein.	0.814
A0A1X7V2L5	A0A1X7UAI6	Uncharacterized protein.	Uncharacterized protein.	0.407
A0A1X7V2L5	A0A1X7V079	Uncharacterized protein.	Uncharacterized protein.	0.485
A0A1X7V2L5	A0A1X7VPF8	Uncharacterized protein.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.403
A0A1X7VPF8	A0A1X7U734	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Uncharacterized protein.	0.759
A0A1X7VPF8	A0A1X7V079	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Uncharacterized protein.	0.711
A0A1X7VPF8	A0A1X7V2L5	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Uncharacterized protein.	0.403