STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1X7V715Lactamase_B domain-containing protein. (712 aa)    
Predicted Functional Partners:
A0A1X7VGK7
Uncharacterized protein.
   
   0.940
A0A1X7UGN7
Uncharacterized protein.
  
  
0.915
A0A1X7UX90
Uncharacterized protein.
   
  
 0.820
A0A1X7VTH8
WD_REPEATS_REGION domain-containing protein.
   
    0.736
A0A1X7VLE1
Hexosyltransferase.
   
   0.706
A0A1X7U326
tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.
  
  
 0.705
A0A1X7UMN3
SAM-dependent MTase TRM10-type domain-containing protein.
   
 
 0.627
A0A1X7TZJ8
SpoU_methylase domain-containing protein.
  
 
 0.626
A0A1X7VHF9
WD_REPEATS_REGION domain-containing protein.
   
    0.603
A0A1X7UB42
tRNA_int_endo domain-containing protein.
  
  
 0.590
Your Current Organism:
Amphimedon queenslandica
NCBI taxonomy Id: 400682
Other names: A. queenslandica, Amphimedon queenslandica Hooper & Van Soest, 2006, Reniera sp. JGI-2005
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