A0A1X7VD09 protein (Amphimedon queenslandica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1X7VD09

Isocitrate dehydrogenase [NAD] subunit, mitochondrial. (374 aa)

Predicted Functional Partners:

A0A1X7TNH2

0.997

A0A1X7TRJ9

0.997

A0A1X7V8F0

0.997

A0A1X7TY60

0.990

A0A1X7V7G5

0.990

A0A1X7SLK9

0.977

A0A1X7T2K9

0.977

A0A1X7VVE4

0.963

A0A1X7VD82

0.924

A0A1X7VMG4

0.923

Your Current Organism:

Amphimedon queenslandica

NCBI taxonomy Id: 400682
Other names: A. queenslandica, Amphimedon queenslandica Hooper & Van Soest, 2006, Reniera sp. JGI-2005

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1X7SLK9	A0A1X7TRJ9	Iso_dh domain-containing protein.	Uncharacterized protein.	0.526
A0A1X7SLK9	A0A1X7TY60	Iso_dh domain-containing protein.	Transket_pyr domain-containing protein.	0.780
A0A1X7SLK9	A0A1X7V7G5	Iso_dh domain-containing protein.	Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.	0.628
A0A1X7SLK9	A0A1X7V8F0	Iso_dh domain-containing protein.	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	0.883
A0A1X7SLK9	A0A1X7VD09	Iso_dh domain-containing protein.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.977
A0A1X7SLK9	A0A1X7VD82	Iso_dh domain-containing protein.	ATP synthase subunit gamma.	0.643
A0A1X7SLK9	A0A1X7VMG4	Iso_dh domain-containing protein.	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.531
A0A1X7SLK9	A0A1X7VVE4	Iso_dh domain-containing protein.	Aconitate hydratase; Belongs to the aconitase/IPM isomerase family.	0.584
A0A1X7T2K9	A0A1X7TNH2	Iso_dh domain-containing protein.	Iso_dh domain-containing protein.	0.409
A0A1X7T2K9	A0A1X7TY60	Iso_dh domain-containing protein.	Transket_pyr domain-containing protein.	0.780
A0A1X7T2K9	A0A1X7V7G5	Iso_dh domain-containing protein.	Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.	0.628
A0A1X7T2K9	A0A1X7V8F0	Iso_dh domain-containing protein.	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	0.883
A0A1X7T2K9	A0A1X7VD09	Iso_dh domain-containing protein.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.977
A0A1X7T2K9	A0A1X7VD82	Iso_dh domain-containing protein.	ATP synthase subunit gamma.	0.643
A0A1X7T2K9	A0A1X7VMG4	Iso_dh domain-containing protein.	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.531
A0A1X7T2K9	A0A1X7VVE4	Iso_dh domain-containing protein.	Aconitate hydratase; Belongs to the aconitase/IPM isomerase family.	0.584
A0A1X7TNH2	A0A1X7T2K9	Iso_dh domain-containing protein.	Iso_dh domain-containing protein.	0.409
A0A1X7TNH2	A0A1X7TRJ9	Iso_dh domain-containing protein.	Uncharacterized protein.	0.901
A0A1X7TNH2	A0A1X7TY60	Iso_dh domain-containing protein.	Transket_pyr domain-containing protein.	0.977
A0A1X7TNH2	A0A1X7V7G5	Iso_dh domain-containing protein.	Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.	0.961