STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1X7VGM4Eukaryotic translation initiation factor 5A. (156 aa)    
Predicted Functional Partners:
A0A1X7UMC8
Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.999
A0A1X7V2Q5
Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.
  
 
 0.999
A0A1X7VSI6
Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.
   
 
 0.999
A0A1X7VVL0
Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.
   
 
 0.999
A0A1X7UX89
Uncharacterized protein.
   
 
 0.998
A0A1X7TUG1
Ribosomal_L7Ae domain-containing protein.
   
 
 0.997
A0A1X7U3Y5
Uncharacterized protein.
  
 
 0.997
A0A1X7V3D3
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 
 0.997
A0A1X7V8E5
Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.
   
 
 0.997
A0A1X7U2Y5
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
   
 
 0.996
Your Current Organism:
Amphimedon queenslandica
NCBI taxonomy Id: 400682
Other names: A. queenslandica, Amphimedon queenslandica Hooper & Van Soest, 2006, Reniera sp. JGI-2005
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