A0A1X7VLB8 protein (Amphimedon queenslandica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1X7VLB8

Uncharacterized protein. (723 aa)

Predicted Functional Partners:

A0A1X7V5M8

0.975

A0A1X7U8D4

0.892

A0A1X7UVE0

0.892

A0A1X7UK09

0.846

A0A1X7UJP7

0.759

A0A1X7V5D6

0.750

A0A1X7UK77

0.598

A0A1X7VDY9

0.539

A0A1X7VQE5

0.514

A0A1X7VUM8

0.454

Your Current Organism:

Amphimedon queenslandica

NCBI taxonomy Id: 400682
Other names: A. queenslandica, Amphimedon queenslandica Hooper & Van Soest, 2006, Reniera sp. JGI-2005

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1X7U8D4	A0A1X7UJP7	Ion_trans domain-containing protein.	PDZ domain-containing protein.	0.453
A0A1X7U8D4	A0A1X7UK09	Ion_trans domain-containing protein.	Ion_trans domain-containing protein.	0.850
A0A1X7U8D4	A0A1X7UK77	Ion_trans domain-containing protein.	Uncharacterized protein.	0.585
A0A1X7U8D4	A0A1X7UVE0	Ion_trans domain-containing protein.	Ion_trans domain-containing protein.	0.898
A0A1X7U8D4	A0A1X7V5D6	Ion_trans domain-containing protein.	Uncharacterized protein.	0.660
A0A1X7U8D4	A0A1X7V5M8	Ion_trans domain-containing protein.	Ion_trans domain-containing protein.	0.928
A0A1X7U8D4	A0A1X7VLB8	Ion_trans domain-containing protein.	Uncharacterized protein.	0.892
A0A1X7U8D4	A0A1X7VQE5	Ion_trans domain-containing protein.	EF-hand domain-containing protein.	0.667
A0A1X7UJP7	A0A1X7U8D4	PDZ domain-containing protein.	Ion_trans domain-containing protein.	0.453
A0A1X7UJP7	A0A1X7UK09	PDZ domain-containing protein.	Ion_trans domain-containing protein.	0.600
A0A1X7UJP7	A0A1X7UK77	PDZ domain-containing protein.	Uncharacterized protein.	0.548
A0A1X7UJP7	A0A1X7UVE0	PDZ domain-containing protein.	Ion_trans domain-containing protein.	0.776
A0A1X7UJP7	A0A1X7V5M8	PDZ domain-containing protein.	Ion_trans domain-containing protein.	0.587
A0A1X7UJP7	A0A1X7VLB8	PDZ domain-containing protein.	Uncharacterized protein.	0.759
A0A1X7UK09	A0A1X7U8D4	Ion_trans domain-containing protein.	Ion_trans domain-containing protein.	0.850
A0A1X7UK09	A0A1X7UJP7	Ion_trans domain-containing protein.	PDZ domain-containing protein.	0.600
A0A1X7UK09	A0A1X7UK77	Ion_trans domain-containing protein.	Uncharacterized protein.	0.908
A0A1X7UK09	A0A1X7UVE0	Ion_trans domain-containing protein.	Ion_trans domain-containing protein.	0.962
A0A1X7UK09	A0A1X7V5D6	Ion_trans domain-containing protein.	Uncharacterized protein.	0.553
A0A1X7UK09	A0A1X7V5M8	Ion_trans domain-containing protein.	Ion_trans domain-containing protein.	0.946