STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1X7VTQ4Exonuclease domain-containing protein. (209 aa)    
Predicted Functional Partners:
A0A1X7UE51
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
      
 0.613
A0A1X7V8F8
Uncharacterized protein.
      
 0.595
A0A1X7V9Q6
Uncharacterized protein.
      
 0.558
A0A1X7VCC7
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the [...]
      
 0.553
A0A1X7U566
WD_REPEATS_REGION domain-containing protein.
   
    0.534
A0A1X7VCV6
RNA helicase.
   
  
 0.534
A0A1X7VTH8
WD_REPEATS_REGION domain-containing protein.
   
    0.533
A0A1X7VL87
Uncharacterized protein.
      
 0.530
A0A1X7T7Q9
Uncharacterized protein.
      
 0.499
A0A1X7V3Q3
Uncharacterized protein.
      
 0.499
Your Current Organism:
Amphimedon queenslandica
NCBI taxonomy Id: 400682
Other names: A. queenslandica, Amphimedon queenslandica Hooper & Van Soest, 2006, Reniera sp. JGI-2005
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