STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1X7VUP1Uncharacterized protein. (632 aa)    
Predicted Functional Partners:
A0A1X7VES3
Uncharacterized protein.
   
 0.634
A0A1X7SHM7
Uncharacterized protein.
    
  0.630
A0A1X7U449
Uncharacterized protein.
   
 
  0.604
A0A1X7UBS4
Uncharacterized protein.
     
 0.602
A0A1X7U663
HTH TFE/IIEalpha-type domain-containing protein.
    
  0.589
A0A1X7U8L5
Cyclin N-terminal domain-containing protein.
     
 0.588
A0A1X7VDC5
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
     
 0.579
A0A1X7VEJ8
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
     
 0.567
A0A1X7U248
BZIP domain-containing protein.
    
 0.552
B1A9Y0_AMPQE
Bsh-like.
   
 0.541
Your Current Organism:
Amphimedon queenslandica
NCBI taxonomy Id: 400682
Other names: A. queenslandica, Amphimedon queenslandica Hooper & Van Soest, 2006, Reniera sp. JGI-2005
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