C0Q70_15234 protein (Pomacea canaliculata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C0Q70_15234

Uncharacterized protein. (211 aa)

Predicted Functional Partners:

C0Q70_17976

0.732

C0Q70_15319

0.702

C0Q70_18913

0.699

C0Q70_03646

0.680

C0Q70_05821

0.671

C0Q70_11590

0.670

C0Q70_05448

0.648

C0Q70_18538

0.646

C0Q70_01650

0.642

C0Q70_10692

0.634

Your Current Organism:

Pomacea canaliculata

NCBI taxonomy Id: 400727
Other names: P. canaliculata

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C0Q70_01650	C0Q70_15234	A0A2T7Q022	A0A2T7NU89	C1q domain-containing protein.	Uncharacterized protein.	0.642
C0Q70_01650	C0Q70_15319	A0A2T7Q022	A0A2T7NUJ2	C1q domain-containing protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.478
C0Q70_03646	C0Q70_05821	A0A2T7PTE3	A0A2T7PM89	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Uncharacterized protein.	0.998
C0Q70_03646	C0Q70_10692	A0A2T7PTE3	A0A2T7P3X4	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Lebercilin domain-containing protein.	0.976
C0Q70_03646	C0Q70_15234	A0A2T7PTE3	A0A2T7NU89	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Uncharacterized protein.	0.680
C0Q70_03646	C0Q70_15319	A0A2T7PTE3	A0A2T7NUJ2	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.671
C0Q70_03646	C0Q70_18913	A0A2T7PTE3	A0A2T7NHX5	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Uncharacterized protein.	0.998
C0Q70_05448	C0Q70_15234	A0A2T7PL76	A0A2T7NU89	Uncharacterized protein.	Uncharacterized protein.	0.648
C0Q70_05448	C0Q70_15319	A0A2T7PL76	A0A2T7NUJ2	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.680
C0Q70_05448	C0Q70_17976	A0A2T7PL76	A0A2T7NLY6	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.955
C0Q70_05448	C0Q70_18538	A0A2T7PL76	A0A2T7NGT1	Uncharacterized protein.	Uncharacterized protein.	0.985
C0Q70_05448	C0Q70_18913	A0A2T7PL76	A0A2T7NHX5	Uncharacterized protein.	Uncharacterized protein.	0.618
C0Q70_05821	C0Q70_03646	A0A2T7PM89	A0A2T7PTE3	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.998
C0Q70_05821	C0Q70_10692	A0A2T7PM89	A0A2T7P3X4	Uncharacterized protein.	Lebercilin domain-containing protein.	0.974
C0Q70_05821	C0Q70_15234	A0A2T7PM89	A0A2T7NU89	Uncharacterized protein.	Uncharacterized protein.	0.671
C0Q70_05821	C0Q70_15319	A0A2T7PM89	A0A2T7NUJ2	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.657
C0Q70_05821	C0Q70_18913	A0A2T7PM89	A0A2T7NHX5	Uncharacterized protein.	Uncharacterized protein.	0.999
C0Q70_10692	C0Q70_03646	A0A2T7P3X4	A0A2T7PTE3	Lebercilin domain-containing protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.976
C0Q70_10692	C0Q70_05821	A0A2T7P3X4	A0A2T7PM89	Lebercilin domain-containing protein.	Uncharacterized protein.	0.974
C0Q70_10692	C0Q70_15234	A0A2T7P3X4	A0A2T7NU89	Lebercilin domain-containing protein.	Uncharacterized protein.	0.634