STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ywlFPutative sugar phosphate isomerase YwlF. (156 aa)    
Predicted Functional Partners:
tpiA_1
Triosephosphate isomerase.
 
 
 0.959
KJL44619.1
Xylose isomerase-like TIM barrel.
 
     0.914
ilvC_1
Ketol-acid reductoisomerase.
 
  
  0.909
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
 
 0.900
rpiB
Ribose-5-phosphate isomerase B.
  
  
 
0.891
dhaK_1
PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK.
 
  
 0.877
ttuB
Putative tartrate transporter.
 
     0.862
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
 
 0.861
gndA
6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating.
    
 0.859
pfkB
6-phosphofructokinase isozyme 2; Belongs to the carbohydrate kinase PfkB family.
  
 
 0.820
Your Current Organism:
Microbacterium ginsengisoli
NCBI taxonomy Id: 400772
Other names: DSM 18659, JCM 15304, KCTC 19189, M. ginsengisoli, Microbacterium ginsengisoli Park et al. 2008, strain Gsoil 259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.