STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJL41379.1Hypothetical protein. (147 aa)    
Predicted Functional Partners:
KJL41378.1
Hypothetical protein.
 
     0.889
ribF
Riboflavin biosynthesis protein RibF; Belongs to the ribF family.
       0.843
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
       0.735
KJL41376.1
Uridine kinase.
       0.637
ctaF
Cytochrome c oxidase polypeptide 4.
  
     0.565
ccs1
Cytochrome c biogenesis protein Ccs1.
  
     0.524
ccsB
Cytochrome c biogenesis protein CcsB.
  
     0.521
KJL37165.1
Cytochrome c oxidase caa3 assembly factor (Caa3-CtaG).
  
     0.513
mutY
A/G-specific adenine glycosylase.
       0.501
KJL42778.1
Cytochrome c oxidase caa3 assembly factor (Caa3-CtaG).
  
     0.492
Your Current Organism:
Microbacterium ginsengisoli
NCBI taxonomy Id: 400772
Other names: DSM 18659, JCM 15304, KCTC 19189, M. ginsengisoli, Microbacterium ginsengisoli Park et al. 2008, strain Gsoil 259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.