STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaBRhamnulokinase. (481 aa)    
Predicted Functional Partners:
tsaC1
4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2.
 
 
 0.989
xylA_2
Xylose isomerase.
 
  
 0.988
rhaM_1
L-rhamnose mutarotase.
 
  
 0.952
mdlB
(S)-mandelate dehydrogenase.
  
  
 0.834
fucK
L-fuculokinase.
  
  
  0.827
lsrB
Autoinducer 2-binding protein LsrB precursor.
 
  
 0.750
lacR
Lactose phosphotransferase system repressor.
 
  
 0.682
rhaM_2
L-rhamnose mutarotase.
  
  
 0.671
rbsR
Ribose operon repressor.
 
 
   0.659
xylA_1
Xylose isomerase; Belongs to the xylose isomerase family.
 
 
 0.567
Your Current Organism:
Microbacterium ginsengisoli
NCBI taxonomy Id: 400772
Other names: DSM 18659, JCM 15304, KCTC 19189, M. ginsengisoli, Microbacterium ginsengisoli Park et al. 2008, strain Gsoil 259
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