rbsA_1 protein (Microbacterium ginsengisoli)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rbsA_1

Ribose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (501 aa)

Predicted Functional Partners:

lsrC

0.997

lsrD_1

0.993

rbsC

0.989

lsrB

0.988

alsB

0.961

lsrD_2

0.945

rbsB

0.882

xylH_1

0.875

xylH_2

0.869

KJL35564.1

0.741

Your Current Organism:

Microbacterium ginsengisoli

NCBI taxonomy Id: 400772
Other names: DSM 18659, JCM 15304, KCTC 19189, M. ginsengisoli, Microbacterium ginsengisoli Park et al. 2008, strain Gsoil 259

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KJL35564.1	rbsA_1	RR49_02323	RR49_00526	Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.	Ribose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	0.741
alsB	lsrC	RR49_01468	RR49_00525	D-allose-binding periplasmic protein precursor.	Autoinducer 2 import system permease protein LsrC; Belongs to the binding-protein-dependent transport system permease family.	0.957
alsB	lsrD_1	RR49_01468	RR49_00524	D-allose-binding periplasmic protein precursor.	Autoinducer 2 import system permease protein LsrD; Belongs to the binding-protein-dependent transport system permease family.	0.922
alsB	lsrD_2	RR49_01468	RR49_01890	D-allose-binding periplasmic protein precursor.	Autoinducer 2 import system permease protein LsrD; Belongs to the binding-protein-dependent transport system permease family.	0.945
alsB	rbsA_1	RR49_01468	RR49_00526	D-allose-binding periplasmic protein precursor.	Ribose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	0.961
alsB	rbsC	RR49_01468	RR49_01469	D-allose-binding periplasmic protein precursor.	Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.	0.987
alsB	xylH_1	RR49_01468	RR49_01865	D-allose-binding periplasmic protein precursor.	Xylose transport system permease protein XylH; Belongs to the binding-protein-dependent transport system permease family.	0.854
alsB	xylH_2	RR49_01468	RR49_01868	D-allose-binding periplasmic protein precursor.	Xylose transport system permease protein XylH; Belongs to the binding-protein-dependent transport system permease family.	0.853
lsrB	lsrC	RR49_00523	RR49_00525	Autoinducer 2-binding protein LsrB precursor.	Autoinducer 2 import system permease protein LsrC; Belongs to the binding-protein-dependent transport system permease family.	0.996
lsrB	lsrD_1	RR49_00523	RR49_00524	Autoinducer 2-binding protein LsrB precursor.	Autoinducer 2 import system permease protein LsrD; Belongs to the binding-protein-dependent transport system permease family.	0.993
lsrB	lsrD_2	RR49_00523	RR49_01890	Autoinducer 2-binding protein LsrB precursor.	Autoinducer 2 import system permease protein LsrD; Belongs to the binding-protein-dependent transport system permease family.	0.838
lsrB	rbsA_1	RR49_00523	RR49_00526	Autoinducer 2-binding protein LsrB precursor.	Ribose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	0.988
lsrB	rbsC	RR49_00523	RR49_01469	Autoinducer 2-binding protein LsrB precursor.	Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.	0.889
lsrB	xylH_1	RR49_00523	RR49_01865	Autoinducer 2-binding protein LsrB precursor.	Xylose transport system permease protein XylH; Belongs to the binding-protein-dependent transport system permease family.	0.545
lsrB	xylH_2	RR49_00523	RR49_01868	Autoinducer 2-binding protein LsrB precursor.	Xylose transport system permease protein XylH; Belongs to the binding-protein-dependent transport system permease family.	0.510
lsrC	alsB	RR49_00525	RR49_01468	Autoinducer 2 import system permease protein LsrC; Belongs to the binding-protein-dependent transport system permease family.	D-allose-binding periplasmic protein precursor.	0.957
lsrC	lsrB	RR49_00525	RR49_00523	Autoinducer 2 import system permease protein LsrC; Belongs to the binding-protein-dependent transport system permease family.	Autoinducer 2-binding protein LsrB precursor.	0.996
lsrC	lsrD_1	RR49_00525	RR49_00524	Autoinducer 2 import system permease protein LsrC; Belongs to the binding-protein-dependent transport system permease family.	Autoinducer 2 import system permease protein LsrD; Belongs to the binding-protein-dependent transport system permease family.	0.978
lsrC	rbsA_1	RR49_00525	RR49_00526	Autoinducer 2 import system permease protein LsrC; Belongs to the binding-protein-dependent transport system permease family.	Ribose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	0.997
lsrC	rbsB	RR49_00525	RR49_01889	Autoinducer 2 import system permease protein LsrC; Belongs to the binding-protein-dependent transport system permease family.	D-ribose-binding periplasmic protein precursor.	0.872

page 1 of 4

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About