STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
limB_1Limonene 1,2-monooxygenase. (358 aa)    
Predicted Functional Partners:
phr
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
       0.735
kgtP
Alpha-ketoglutarate permease.
       0.682
ssuE
FMN reductase (NADPH).
 
  0.635
papA3
Acyltransferase papA3.
   
  0.557
KJL39329.1
Hypothetical protein.
       0.534
ntaB
FMN reductase (NADH) NtaB.
  
 
 0.407
pobB
Phenoxybenzoate dioxygenase subunit beta.
   
 
 0.400
Your Current Organism:
Microbacterium ginsengisoli
NCBI taxonomy Id: 400772
Other names: DSM 18659, JCM 15304, KCTC 19189, M. ginsengisoli, Microbacterium ginsengisoli Park et al. 2008, strain Gsoil 259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.