STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nfnBOxygen-insensitive NAD(P)H nitroreductase. (193 aa)    
Predicted Functional Partners:
ribF
Riboflavin biosynthesis protein RibF; Belongs to the ribF family.
    
 0.779
moeZ_1
Putative adenylyltransferase/sulfurtransferase MoeZ.
    
 0.746
ntaB
FMN reductase (NADH) NtaB.
  
 
 0.745
ssuE
FMN reductase (NADPH).
     
 0.736
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
   
 
 0.619
lgrB
Linear gramicidin synthase subunit B.
   
   0.576
lcfB_1
Long-chain-fatty-acid--CoA ligase.
    
   0.546
lcfB_2
Long-chain-fatty-acid--CoA ligase.
    
   0.546
menE
2-succinylbenzoate--CoA ligase.
    
   0.546
KJL35910.1
Long-chain-fatty-acid--CoA ligase.
    
   0.546
Your Current Organism:
Microbacterium ginsengisoli
NCBI taxonomy Id: 400772
Other names: DSM 18659, JCM 15304, KCTC 19189, M. ginsengisoli, Microbacterium ginsengisoli Park et al. 2008, strain Gsoil 259
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