STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJL38177.1Hypothetical protein. (180 aa)    
Predicted Functional Partners:
KJL38178.1
Hypothetical protein.
       0.811
KJL38176.1
Hypothetical protein.
       0.810
pppA
Leader peptidase PppA; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
       0.807
KJL38179.1
Putative major pilin subunit.
       0.786
KJL38173.1
Hypothetical protein.
       0.661
KJL38174.1
Competence protein A.
       0.658
KJL38172.1
Pilus assembly protein, PilO.
       0.631
gspF
Putative type II secretion system protein F.
       0.625
pilT
Twitching mobility protein.
       0.621
pknE
Serine/threonine-protein kinase PknE.
       0.407
Your Current Organism:
Microbacterium ginsengisoli
NCBI taxonomy Id: 400772
Other names: DSM 18659, JCM 15304, KCTC 19189, M. ginsengisoli, Microbacterium ginsengisoli Park et al. 2008, strain Gsoil 259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.