STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJL37161.1Hypothetical protein. (101 aa)    
Predicted Functional Partners:
pbsA1
Heme oxygenase 1.
 
   
 0.795
yfmC
Fe(3+)-citrate-binding protein YfmC precursor.
 
    0.752
rhtA_2
Threonine/homoserine exporter RhtA.
 
     0.603
KJL37177.1
Hypothetical protein.
  
     0.553
efeU
Ferrous iron permease EfeU.
   
    0.548
KJL37176.1
Hypothetical protein.
  
     0.527
KJL34939.1
Alpha/beta hydrolase family protein.
  
     0.521
KJL34976.1
Alpha/beta hydrolase family protein.
  
     0.521
KJL34876.1
Hypothetical protein.
  
     0.501
KJL35039.1
Hypothetical protein.
  
     0.501
Your Current Organism:
Microbacterium ginsengisoli
NCBI taxonomy Id: 400772
Other names: DSM 18659, JCM 15304, KCTC 19189, M. ginsengisoli, Microbacterium ginsengisoli Park et al. 2008, strain Gsoil 259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.