STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptpAPutative low molecular weight protein-tyrosine-phosphatase. (167 aa)    
Predicted Functional Partners:
ywlE
Low molecular weight protein-tyrosine-phosphatase YwlE.
  
  
  0.896
iphP_1
Tyrosine-protein phosphatase precursor.
     
 0.883
purB
Adenylosuccinate lyase.
       0.788
iphP_2
Tyrosine-protein phosphatase precursor.
     
 0.770
trxA_1
Thioredoxin-1; Belongs to the thioredoxin family.
  
 
 0.702
trxA_2
Thioredoxin-1.
  
 
 0.702
epsL
Putative sugar transferase EpsL.
  
 
 0.653
phr
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
  
 
   0.615
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
   
 
 0.590
KJL37192.1
Hypothetical protein.
       0.586
Your Current Organism:
Microbacterium ginsengisoli
NCBI taxonomy Id: 400772
Other names: DSM 18659, JCM 15304, KCTC 19189, M. ginsengisoli, Microbacterium ginsengisoli Park et al. 2008, strain Gsoil 259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.