Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| apt | pyrE_2 | RR49_02080 | RR49_02385 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. Belongs to the purine/pyrimidine phosphoribosyltransferase family. | Orotate phosphoribosyltransferase. | 0.749 |
| apt | xerC_1 | RR49_02080 | RR49_01142 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. Belongs to the purine/pyrimidine phosphoribosyltransferase family. | Tyrosine recombinase XerC; Belongs to the 'phage' integrase family. | 0.410 |
| apt | xerD_1 | RR49_02080 | RR49_01145 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. Belongs to the purine/pyrimidine phosphoribosyltransferase family. | Tyrosine recombinase XerD; Belongs to the 'phage' integrase family. | 0.410 |
| apt | xerD_3 | RR49_02080 | RR49_02527 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. Belongs to the purine/pyrimidine phosphoribosyltransferase family. | Tyrosine recombinase XerD. | 0.410 |
| brpA_2 | xerC_1 | RR49_01140 | RR49_01142 | Biofilm regulatory protein A precursor. | Tyrosine recombinase XerC; Belongs to the 'phage' integrase family. | 0.402 |
| pta | xerC_1 | RR49_00431 | RR49_01142 | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | Tyrosine recombinase XerC; Belongs to the 'phage' integrase family. | 0.597 |
| pta | xerD_1 | RR49_00431 | RR49_01145 | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | Tyrosine recombinase XerD; Belongs to the 'phage' integrase family. | 0.597 |
| pta | xerD_3 | RR49_00431 | RR49_02527 | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | Tyrosine recombinase XerD. | 0.597 |
| pyrE_2 | apt | RR49_02385 | RR49_02080 | Orotate phosphoribosyltransferase. | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. Belongs to the purine/pyrimidine phosphoribosyltransferase family. | 0.749 |
| pyrE_2 | xerC_1 | RR49_02385 | RR49_01142 | Orotate phosphoribosyltransferase. | Tyrosine recombinase XerC; Belongs to the 'phage' integrase family. | 0.412 |
| pyrE_2 | xerD_1 | RR49_02385 | RR49_01145 | Orotate phosphoribosyltransferase. | Tyrosine recombinase XerD; Belongs to the 'phage' integrase family. | 0.412 |
| pyrE_2 | xerD_3 | RR49_02385 | RR49_02527 | Orotate phosphoribosyltransferase. | Tyrosine recombinase XerD. | 0.412 |
| xerC_1 | apt | RR49_01142 | RR49_02080 | Tyrosine recombinase XerC; Belongs to the 'phage' integrase family. | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. Belongs to the purine/pyrimidine phosphoribosyltransferase family. | 0.410 |
| xerC_1 | brpA_2 | RR49_01142 | RR49_01140 | Tyrosine recombinase XerC; Belongs to the 'phage' integrase family. | Biofilm regulatory protein A precursor. | 0.402 |
| xerC_1 | pta | RR49_01142 | RR49_00431 | Tyrosine recombinase XerC; Belongs to the 'phage' integrase family. | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.597 |
| xerC_1 | pyrE_2 | RR49_01142 | RR49_02385 | Tyrosine recombinase XerC; Belongs to the 'phage' integrase family. | Orotate phosphoribosyltransferase. | 0.412 |
| xerC_1 | xerD_1 | RR49_01142 | RR49_01145 | Tyrosine recombinase XerC; Belongs to the 'phage' integrase family. | Tyrosine recombinase XerD; Belongs to the 'phage' integrase family. | 0.577 |
| xerC_1 | xerD_3 | RR49_01142 | RR49_02527 | Tyrosine recombinase XerC; Belongs to the 'phage' integrase family. | Tyrosine recombinase XerD. | 0.565 |
| xerD_1 | apt | RR49_01145 | RR49_02080 | Tyrosine recombinase XerD; Belongs to the 'phage' integrase family. | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. Belongs to the purine/pyrimidine phosphoribosyltransferase family. | 0.410 |
| xerD_1 | pta | RR49_01145 | RR49_00431 | Tyrosine recombinase XerD; Belongs to the 'phage' integrase family. | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.597 |
page 1 of 2