Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL36665.1 | argA | RR49_01415 | RR49_01418 | Hypothetical protein. | Amino-acid acetyltransferase; Belongs to the acetyltransferase family. | 0.434 |
KJL36665.1 | bcpA | RR49_01415 | RR49_01417 | Hypothetical protein. | Carboxyvinyl-carboxyphosphonate phosphorylmutase. | 0.590 |
KJL36665.1 | menC | RR49_01415 | RR49_01416 | Hypothetical protein. | O-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB). | 0.773 |
KJL37303.1 | bcpA | RR49_01026 | RR49_01417 | Hypothetical protein. | Carboxyvinyl-carboxyphosphonate phosphorylmutase. | 0.733 |
aceB | acnA | RR49_01411 | RR49_02127 | Malate synthase A; Belongs to the malate synthase family. | Aconitate hydratase. | 0.602 |
aceB | bcpA | RR49_01411 | RR49_01417 | Malate synthase A; Belongs to the malate synthase family. | Carboxyvinyl-carboxyphosphonate phosphorylmutase. | 0.636 |
aceB | gltA | RR49_01411 | RR49_00090 | Malate synthase A; Belongs to the malate synthase family. | Citrate synthase; Belongs to the citrate synthase family. | 0.868 |
aceB | gltA2 | RR49_01411 | RR49_00999 | Malate synthase A; Belongs to the malate synthase family. | Citrate synthase 1; Belongs to the citrate synthase family. | 0.943 |
aceB | pucG | RR49_01411 | RR49_02088 | Malate synthase A; Belongs to the malate synthase family. | Purine catabolism protein PucG. | 0.848 |
acnA | aceB | RR49_02127 | RR49_01411 | Aconitate hydratase. | Malate synthase A; Belongs to the malate synthase family. | 0.602 |
acnA | bcpA | RR49_02127 | RR49_01417 | Aconitate hydratase. | Carboxyvinyl-carboxyphosphonate phosphorylmutase. | 0.566 |
acnA | gltA | RR49_02127 | RR49_00090 | Aconitate hydratase. | Citrate synthase; Belongs to the citrate synthase family. | 0.992 |
acnA | gltA2 | RR49_02127 | RR49_00999 | Aconitate hydratase. | Citrate synthase 1; Belongs to the citrate synthase family. | 0.996 |
acnA | prpD | RR49_02127 | RR49_00092 | Aconitate hydratase. | 2-methylcitrate dehydratase. | 0.581 |
argA | KJL36665.1 | RR49_01418 | RR49_01415 | Amino-acid acetyltransferase; Belongs to the acetyltransferase family. | Hypothetical protein. | 0.434 |
argA | bcpA | RR49_01418 | RR49_01417 | Amino-acid acetyltransferase; Belongs to the acetyltransferase family. | Carboxyvinyl-carboxyphosphonate phosphorylmutase. | 0.563 |
argA | menC | RR49_01418 | RR49_01416 | Amino-acid acetyltransferase; Belongs to the acetyltransferase family. | O-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB). | 0.434 |
bcpA | KJL36665.1 | RR49_01417 | RR49_01415 | Carboxyvinyl-carboxyphosphonate phosphorylmutase. | Hypothetical protein. | 0.590 |
bcpA | KJL37303.1 | RR49_01417 | RR49_01026 | Carboxyvinyl-carboxyphosphonate phosphorylmutase. | Hypothetical protein. | 0.733 |
bcpA | aceB | RR49_01417 | RR49_01411 | Carboxyvinyl-carboxyphosphonate phosphorylmutase. | Malate synthase A; Belongs to the malate synthase family. | 0.636 |
page 1 of 3