STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ykoCPutative HMP/thiamine permease protein YkoC. (265 aa)    
Predicted Functional Partners:
ykoD_2
Putative HMP/thiamine import ATP-binding protein YkoD.
  0.991
bioY
Biotin transporter BioY.
 
 0.990
bioM
Biotin transport ATP-binding protein BioM.
 
 0.988
ykoD_1
Putative HMP/thiamine import ATP-binding protein YkoD.
  0.952
ecfT
Energy-coupling factor transporter transmembrane protein EcfT.
  
  
 
0.909
KJL36599.1
ABC-type cobalt transport system, permease component.
  
  
 0.793
gsiA_1
Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily.
 
  0.735
gsiA_2
Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily.
 
  0.735
oppF
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
  
  0.735
ykoE
Putative HMP/thiamine permease protein YkoE.
 
  
 0.725
Your Current Organism:
Microbacterium ginsengisoli
NCBI taxonomy Id: 400772
Other names: DSM 18659, JCM 15304, KCTC 19189, M. ginsengisoli, Microbacterium ginsengisoli Park et al. 2008, strain Gsoil 259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.