STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
int-Tn_1Transposase from transposon Tn916; Belongs to the 'phage' integrase family. (396 aa)    
Predicted Functional Partners:
KJL36412.1
Helix-turn-helix domain protein.
 
     0.948
KJL36413.1
Hypothetical protein.
 
     0.834
KJL36414.1
Single-stranded DNA-binding protein.
       0.757
KJL36416.1
Hypothetical protein.
 
     0.677
KJL36415.1
Type IV secretory system Conjugative DNA transfer.
 
     0.641
KJL39029.1
Hypothetical protein.
  
     0.619
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.597
xerD_3
Tyrosine recombinase XerD.
  
     0.538
cdhR_2
HTH-type transcriptional regulator CdhR.
  
     0.451
pyrE_2
Orotate phosphoribosyltransferase.
   
    0.412
Your Current Organism:
Microbacterium ginsengisoli
NCBI taxonomy Id: 400772
Other names: DSM 18659, JCM 15304, KCTC 19189, M. ginsengisoli, Microbacterium ginsengisoli Park et al. 2008, strain Gsoil 259
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.