STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJL36016.1HTH-type transcriptional regulator. (115 aa)    
Predicted Functional Partners:
KJL36017.1
Hypothetical protein; Activator of Hsp90 ATPase homolog 1-like protein.
 
    0.910
sdpR
Transcriptional repressor SdpR.
  
     0.712
KJL36015.1
Hypothetical protein.
       0.625
cnrH
RNA polymerase sigma factor CnrH; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.479
trxB_1
Thioredoxin reductase.
 
  
 0.415
KJL36014.1
Hypothetical protein.
       0.406
Your Current Organism:
Microbacterium ginsengisoli
NCBI taxonomy Id: 400772
Other names: DSM 18659, JCM 15304, KCTC 19189, M. ginsengisoli, Microbacterium ginsengisoli Park et al. 2008, strain Gsoil 259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.