STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdpEKDP operon transcriptional regulatory protein KdpE. (225 aa)    
Predicted Functional Partners:
kdpD
Sensor protein KdpD.
 
 0.998
senX3
Signal-transduction histidine kinase senX3.
 0.906
cusS
Sensor kinase CusS.
  
  0.905
phoR_4
Alkaline phosphatase synthesis sensor protein PhoR.
  
  0.893
phoR_5
Alkaline phosphatase synthesis sensor protein PhoR.
  
  0.893
phoR_1
Alkaline phosphatase synthesis sensor protein PhoR.
 
  0.891
phoR_2
Alkaline phosphatase synthesis sensor protein PhoR.
 
  0.886
tcrY_1
Putative sensor histidine kinase TcrY.
 
  0.878
tcrY_2
Putative sensor histidine kinase TcrY.
 
  0.878
baeS_1
Signal transduction histidine-protein kinase BaeS.
  
  0.869
Your Current Organism:
Microbacterium ginsengisoli
NCBI taxonomy Id: 400772
Other names: DSM 18659, JCM 15304, KCTC 19189, M. ginsengisoli, Microbacterium ginsengisoli Park et al. 2008, strain Gsoil 259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.