kdpE protein (Microbacterium ginsengisoli) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

kdpE

KDP operon transcriptional regulatory protein KdpE. (225 aa)

Predicted Functional Partners:

kdpD

0.995

cusS

0.863

senX3

0.858

phoR_4

0.848

phoR_5

0.848

phoR_1

0.842

phoR_2

0.837

cph1

0.830

kdpC

0.829

phoR_3

0.826

Your Current Organism:

Microbacterium ginsengisoli

NCBI taxonomy Id: 400772
Other names: DSM 18659, JCM 15304, KCTC 19189, M. ginsengisoli, Microbacterium ginsengisoli Park et al. 2008, strain Gsoil 259

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cph1	cusS	RR49_00661	RR49_01450	Phytochrome-like protein cph1.	Sensor kinase CusS.	0.839
cph1	kdpD	RR49_00661	RR49_02066	Phytochrome-like protein cph1.	Sensor protein KdpD.	0.902
cph1	kdpE	RR49_00661	RR49_02065	Phytochrome-like protein cph1.	KDP operon transcriptional regulatory protein KdpE.	0.830
cph1	phoR_1	RR49_00661	RR49_00107	Phytochrome-like protein cph1.	Alkaline phosphatase synthesis sensor protein PhoR.	0.830
cph1	phoR_2	RR49_00661	RR49_00404	Phytochrome-like protein cph1.	Alkaline phosphatase synthesis sensor protein PhoR.	0.862
cph1	phoR_3	RR49_00661	RR49_00554	Phytochrome-like protein cph1.	Alkaline phosphatase synthesis sensor protein PhoR.	0.859
cph1	phoR_4	RR49_00661	RR49_02713	Phytochrome-like protein cph1.	Alkaline phosphatase synthesis sensor protein PhoR.	0.841
cph1	phoR_5	RR49_00661	RR49_02988	Phytochrome-like protein cph1.	Alkaline phosphatase synthesis sensor protein PhoR.	0.841
cph1	senX3	RR49_00661	RR49_00783	Phytochrome-like protein cph1.	Signal-transduction histidine kinase senX3.	0.857
cusS	cph1	RR49_01450	RR49_00661	Sensor kinase CusS.	Phytochrome-like protein cph1.	0.839
cusS	kdpE	RR49_01450	RR49_02065	Sensor kinase CusS.	KDP operon transcriptional regulatory protein KdpE.	0.863
cusS	phoR_1	RR49_01450	RR49_00107	Sensor kinase CusS.	Alkaline phosphatase synthesis sensor protein PhoR.	0.754
cusS	phoR_2	RR49_01450	RR49_00404	Sensor kinase CusS.	Alkaline phosphatase synthesis sensor protein PhoR.	0.589
cusS	phoR_3	RR49_01450	RR49_00554	Sensor kinase CusS.	Alkaline phosphatase synthesis sensor protein PhoR.	0.415
cusS	senX3	RR49_01450	RR49_00783	Sensor kinase CusS.	Signal-transduction histidine kinase senX3.	0.409
kdpC	kdpD	RR49_02067	RR49_02066	Potassium-transporting ATPase C chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex.	Sensor protein KdpD.	0.990
kdpC	kdpE	RR49_02067	RR49_02065	Potassium-transporting ATPase C chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex.	KDP operon transcriptional regulatory protein KdpE.	0.829
kdpD	cph1	RR49_02066	RR49_00661	Sensor protein KdpD.	Phytochrome-like protein cph1.	0.902
kdpD	kdpC	RR49_02066	RR49_02067	Sensor protein KdpD.	Potassium-transporting ATPase C chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex.	0.990
kdpD	kdpE	RR49_02066	RR49_02065	Sensor protein KdpD.	KDP operon transcriptional regulatory protein KdpE.	0.995