STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lpqBLipoprotein LpqB precursor. (565 aa)    
Predicted Functional Partners:
mtrB
Sensor histidine kinase MtrB.
 
    0.881
mtrA
DNA-binding response regulator MtrA.
     
 0.801
pyrE_2
Orotate phosphoribosyltransferase.
 
     0.699
KJL36355.1
Hypothetical protein.
  
 
   0.659
ftsL_1
Cell division protein FtsL.
  
     0.601
ftsL_2
Cell division protein FtsL.
  
     0.601
KJL35929.1
Hypothetical protein.
  
     0.570
KJL38244.1
Hypothetical protein.
  
    0.563
KJL38243.1
Hypothetical protein.
  
     0.530
KJL38844.1
Hypothetical protein.
  
     0.519
Your Current Organism:
Microbacterium ginsengisoli
NCBI taxonomy Id: 400772
Other names: DSM 18659, JCM 15304, KCTC 19189, M. ginsengisoli, Microbacterium ginsengisoli Park et al. 2008, strain Gsoil 259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.