STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppC_2Oligopeptide transport system permease protein OppC. (294 aa)    
Predicted Functional Partners:
oppD
Oligopeptide transport ATP-binding protein OppD.
 
 0.999
hbpA
Heme-binding protein A precursor.
 
 0.999
oppF
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 0.994
gsiC
Glutathione transport system permease protein GsiC.
 
 
 0.993
gsiA_1
Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily.
 
 0.987
gsiA_2
Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily.
 
 0.986
dppB_2
Dipeptide transport system permease protein DppB.
 
 
 0.973
dppB_1
Dipeptide transport system permease protein DppB.
 
 
 0.971
appA
Oligopeptide-binding protein AppA precursor.
 
 0.881
ddpA
Putative D,D-dipeptide-binding periplasmic protein DdpA precursor.
 
 0.878
Your Current Organism:
Microbacterium ginsengisoli
NCBI taxonomy Id: 400772
Other names: DSM 18659, JCM 15304, KCTC 19189, M. ginsengisoli, Microbacterium ginsengisoli Park et al. 2008, strain Gsoil 259
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