STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oatA_2O-acetyltransferase OatA. (692 aa)    
Predicted Functional Partners:
dapH
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase.
 
     0.799
nfdA_2
N-substituted formamide deformylase precursor.
       0.610
paiB
Protease synthase and sporulation protein PAI 2.
       0.610
nei1_2
Endonuclease 8 1; Belongs to the FPG family.
       0.606
rpiB
Ribose-5-phosphate isomerase B.
       0.606
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
       0.602
recD
RecBCD enzyme subunit RecD.
  
    0.595
pepN_2
Aminopeptidase N.
 
     0.508
epsL
Putative sugar transferase EpsL.
     
 0.468
glbO
Group 2 truncated hemoglobin GlbO.
 
     0.413
Your Current Organism:
Microbacterium ginsengisoli
NCBI taxonomy Id: 400772
Other names: DSM 18659, JCM 15304, KCTC 19189, M. ginsengisoli, Microbacterium ginsengisoli Park et al. 2008, strain Gsoil 259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.