Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL35264.1 | tesB | RR49_02485 | RR49_02486 | Hypothetical protein. | Acyl-CoA thioesterase 2. | 0.674 |
KJL35266.1 | fadB | RR49_02487 | RR49_02129 | Thioesterase superfamily protein. | Fatty acid oxidation complex subunit alpha. | 0.730 |
KJL35266.1 | tesB | RR49_02487 | RR49_02486 | Thioesterase superfamily protein. | Acyl-CoA thioesterase 2. | 0.432 |
KJL36930.1 | KJL37120.1 | RR49_01265 | RR49_01233 | Long-chain-fatty-acid--CoA ligase FadD15. | Long-chain-fatty-acid--CoA ligase FadD15. | 0.892 |
KJL36930.1 | tesB | RR49_01265 | RR49_02486 | Long-chain-fatty-acid--CoA ligase FadD15. | Acyl-CoA thioesterase 2. | 0.421 |
KJL37120.1 | KJL36930.1 | RR49_01233 | RR49_01265 | Long-chain-fatty-acid--CoA ligase FadD15. | Long-chain-fatty-acid--CoA ligase FadD15. | 0.892 |
KJL37120.1 | tesB | RR49_01233 | RR49_02486 | Long-chain-fatty-acid--CoA ligase FadD15. | Acyl-CoA thioesterase 2. | 0.421 |
fadB | KJL35266.1 | RR49_02129 | RR49_02487 | Fatty acid oxidation complex subunit alpha. | Thioesterase superfamily protein. | 0.730 |
fadB | tesB | RR49_02129 | RR49_02486 | Fatty acid oxidation complex subunit alpha. | Acyl-CoA thioesterase 2. | 0.478 |
pdxS | pdxT | RR49_02151 | RR49_02152 | Pyridoxal biosynthesis lyase PdxS; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. | Glutamine amidotransferase subunit PdxT; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. | 0.999 |
pdxS | tesB | RR49_02151 | RR49_02486 | Pyridoxal biosynthesis lyase PdxS; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. | Acyl-CoA thioesterase 2. | 0.485 |
pdxT | pdxS | RR49_02152 | RR49_02151 | Glutamine amidotransferase subunit PdxT; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. | Pyridoxal biosynthesis lyase PdxS; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. | 0.999 |
pdxT | tesB | RR49_02152 | RR49_02486 | Glutamine amidotransferase subunit PdxT; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. | Acyl-CoA thioesterase 2. | 0.476 |
tesB | KJL35264.1 | RR49_02486 | RR49_02485 | Acyl-CoA thioesterase 2. | Hypothetical protein. | 0.674 |
tesB | KJL35266.1 | RR49_02486 | RR49_02487 | Acyl-CoA thioesterase 2. | Thioesterase superfamily protein. | 0.432 |
tesB | KJL36930.1 | RR49_02486 | RR49_01265 | Acyl-CoA thioesterase 2. | Long-chain-fatty-acid--CoA ligase FadD15. | 0.421 |
tesB | KJL37120.1 | RR49_02486 | RR49_01233 | Acyl-CoA thioesterase 2. | Long-chain-fatty-acid--CoA ligase FadD15. | 0.421 |
tesB | fadB | RR49_02486 | RR49_02129 | Acyl-CoA thioesterase 2. | Fatty acid oxidation complex subunit alpha. | 0.478 |
tesB | pdxS | RR49_02486 | RR49_02151 | Acyl-CoA thioesterase 2. | Pyridoxal biosynthesis lyase PdxS; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. | 0.485 |
tesB | pdxT | RR49_02486 | RR49_02152 | Acyl-CoA thioesterase 2. | Glutamine amidotransferase subunit PdxT; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. | 0.476 |
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