Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL34961.1 | KJL34962.1 | RR49_02855 | RR49_02856 | Serine protease. | Bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase. | 0.541 |
KJL34961.1 | KJL37164.1 | RR49_02855 | RR49_01052 | Serine protease. | Hypothetical protein. | 0.626 |
KJL34961.1 | degP | RR49_02855 | RR49_02674 | Serine protease. | Periplasmic serine endoprotease DegP precursor. | 0.748 |
KJL34961.1 | epsH_3 | RR49_02855 | RR49_02861 | Serine protease. | Putative glycosyltransferase EpsH. | 0.547 |
KJL34961.1 | fruA | RR49_02855 | RR49_02581 | Serine protease. | PTS system fructose-specific EIIABC component. | 0.569 |
KJL34961.1 | glpK | RR49_02855 | RR49_01514 | Serine protease. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.813 |
KJL34961.1 | nifS_2 | RR49_02855 | RR49_02860 | Serine protease. | Cysteine desulfurase. | 0.546 |
KJL34961.1 | rplK | RR49_02855 | RR49_01396 | Serine protease. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.564 |
KJL34961.1 | rplU | RR49_02855 | RR49_02445 | Serine protease. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.567 |
KJL34961.1 | rpsF | RR49_02855 | RR49_01952 | Serine protease. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.557 |
KJL34962.1 | KJL34961.1 | RR49_02856 | RR49_02855 | Bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase. | Serine protease. | 0.541 |
KJL34962.1 | epsH_3 | RR49_02856 | RR49_02861 | Bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase. | Putative glycosyltransferase EpsH. | 0.774 |
KJL34962.1 | nifS_2 | RR49_02856 | RR49_02860 | Bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase. | Cysteine desulfurase. | 0.822 |
KJL37164.1 | KJL34961.1 | RR49_01052 | RR49_02855 | Hypothetical protein. | Serine protease. | 0.626 |
KJL37164.1 | rplK | RR49_01052 | RR49_01396 | Hypothetical protein. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.909 |
KJL37164.1 | rplU | RR49_01052 | RR49_02445 | Hypothetical protein. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.789 |
KJL37164.1 | rpsF | RR49_01052 | RR49_01952 | Hypothetical protein. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.903 |
degP | KJL34961.1 | RR49_02674 | RR49_02855 | Periplasmic serine endoprotease DegP precursor. | Serine protease. | 0.748 |
degP | fruA | RR49_02674 | RR49_02581 | Periplasmic serine endoprotease DegP precursor. | PTS system fructose-specific EIIABC component. | 0.569 |
degP | glpK | RR49_02674 | RR49_01514 | Periplasmic serine endoprotease DegP precursor. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.813 |
page 1 of 3