STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xseB_2Exodeoxyribonuclease 7 small subunit. (77 aa)    
Predicted Functional Partners:
xseA_2
Exodeoxyribonuclease 7 large subunit.
 
 0.993
xseA_1
Exodeoxyribonuclease 7 large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
 
 0.975
KJL34990.1
Hypothetical protein.
       0.788
mtcA2_2
Carbonic anhydrase 2.
       0.788
fumC_2
Fumarate hydratase class II.
       0.685
ispH_2
4-hydroxy-3-methylbut-2-enyl diphosphate reductase.
     
 0.595
ydaF_3
Putative ribosomal N-acetyltransferase YdaF.
  
     0.570
ydaF_4
Putative ribosomal N-acetyltransferase YdaF.
  
     0.570
KJL34986.1
Hypothetical protein.
  
    0.560
KJL34985.1
6-N-hydroxylaminopurine resistance protein.
       0.543
Your Current Organism:
Microbacterium ginsengisoli
NCBI taxonomy Id: 400772
Other names: DSM 18659, JCM 15304, KCTC 19189, M. ginsengisoli, Microbacterium ginsengisoli Park et al. 2008, strain Gsoil 259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.