STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alkJ_3Alcohol dehydrogenase [acceptor]. (514 aa)    
Predicted Functional Partners:
qcrC
Menaquinol-cytochrome c reductase cytochrome c subunit.
   
 
 0.893
KJL35123.1
Hypothetical protein.
 
     0.813
KJL36807.1
Hypothetical protein.
    
  0.810
KJL36809.1
Hypothetical protein.
    
  0.810
feaB_2
Phenylacetaldehyde dehydrogenase.
 
 
 0.793
livH_4
High-affinity branched-chain amino acid transport system permease protein LivH.
  
    0.776
livF_4
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
  
    0.775
lptB_4
Lipopolysaccharide export system ATP-binding protein LptB.
       0.773
KJL35121.1
Leucine/isoleucine/valine transporter permease subunit.
       0.773
KJL37047.1
IPT/TIG domain protein.
   
 
 0.742
Your Current Organism:
Microbacterium ginsengisoli
NCBI taxonomy Id: 400772
Other names: DSM 18659, JCM 15304, KCTC 19189, M. ginsengisoli, Microbacterium ginsengisoli Park et al. 2008, strain Gsoil 259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.